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1

EMAN2: An extensible image processing suite for electron microscopy

Guang Tang, Liwei Peng, Philip R. Baldwin, Deepinder S. Mann, Wen Jiang, Ian Rees, Steven J. Ludtke

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 925 KB

english, 2007

2

Bixbyite-type phases in the system Ta-Zr-O-N

Lüdtke, Tobias, Orthmann, Steven, Lerch, Martin

Journal:

Zeitschrift für Naturforschung B

Year:

2017

Language:

english

File:

PDF, 424 KB

english, 2017

3

Cryo-EM of macromolecular assemblies at near-atomic resolution

Baker, Matthew L, Zhang, Junjie, Ludtke, Steven J, Chiu, Wah

Journal:

Nature Protocols

Year:

2010

Language:

english

File:

PDF, 1.78 MB

english, 2010

4

Seeing GroEL at 6 Å Resolution by Single Particle Electron Cryomicroscopy

Steven J Ludtke, Dong-Hua Chen, Jiu-Li Song, David T Chuang, Wah Chiu

Journal:

Year:

2004

Language:

english

File:

PDF, 1.59 MB

english, 2004

5

Application of Deep Learning to CryoEM Heterogeneity Analysis

Chen, Muyuan, Baker, Matthew L., Ludtke, Steven J.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

6

Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach

Zhang, Kaiming, Keane, Sarah C., Su, Zhaoming, Irobalieva, Rossitza N., Chen, Muyuan, Van, Verna, Sciandra, Carly A., Marchant, Jan, Heng, Xiao, Schmid, Michael F., Case, David A., Ludtke, Steven J.,

Journal:

Year:

2018

Language:

english

File:

PDF, 2.57 MB

english, 2018

7

Mechanism of folding chamber closure in a group II chaperonin

Douglas, Nicholai R., Reissmann, Stefanie, Jakana, Joanita, Dougherty, Matthew, Fu, Caroline J., Levitt, Michael, Ludtke, Steven J., Zhang, Junjie, Baker, Matthew L., Schröder, Gunnar F.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

8

Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT

Booth, Christopher R, Meyer, Anne S, Cong, Yao, Topf, Maya, Sali, Andrej, Ludtke, Steven J, Chiu, Wah, Frydman, Judith

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 829 KB

english, 2008

9

Close membrane-membrane proximity induced by Ca2+-dependent multivalent binding of synaptotagmin-1 to phospholipids

Araç, Demet, Chen, Xiaocheng, Khant, Htet A, Ubach, Josep, Ludtke, Steven J, Kikkawa, Masahide, Johnson, Arthur E, Chiu, Wah, Südhof, Thomas C, Rizo, Josep

Journal:

Nature Structural and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 671 KB

english, 2006

10

Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer

Mao, Yuxin, Vyas, Nand K, Vyas, Meenakshi N, Chen, Dong-Hua, Ludtke, Steven J, Chiu, Wah, Quiocho, Florante A

Journal:

The EMBO Journal

Year:

2004

Language:

english

File:

PDF, 399 KB

english, 2004

11

The 2010 cryo-em modeling challenge

Steven J. Ludtke, Catherine L. Lawson, Gerard J. Kleywegt, Helen Berman, Wah Chiu

Journal:

Year:

2012

Language:

english

File:

PDF, 783 KB

english, 2012

12

Electron cryomicroscopy of single particles at subnanometer resolution

Wen Jiang, Steven J Ludtke

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 1.02 MB

english, 2005

13

Experimental Verification of Conformational Variation of Human Fatty Acid Synthase as Predicted by Normal Mode Analysis

Jacob Brink, Steven J. Ludtke, Yifei Kong, Salih J. Wakil, Jianpeng Ma, Wah Chiu

Journal:

Year:

2004

Language:

english

File:

PDF, 254 KB

english, 2004

14

The Pore Structure of the Closed RyR1 Channel

Steven J. Ludtke, Irina I. Serysheva, Susan L. Hamilton, Wah Chiu

Journal:

Year:

2005

Language:

english

File:

PDF, 751 KB

english, 2005

15

A Structure of the Human Apoptosome at 12.8 Å Resolution Provides Insights into This Cell Death Platform

Xinchao Yu, Devrim Acehan, Jean-François Ménétret, Christopher R. Booth, Steven J. Ludtke, Stefan J. Riedl, Yigong Shi, Xiaodong Wang, Christopher W. Akey

Journal:

Year:

2005

Language:

english

File:

PDF, 1.16 MB

english, 2005

16

An Expanded Conformation of Single-Ring GroEL-GroES Complex Encapsulates an 86 kDa Substrate

Dong-Hua Chen, Jiu-Li Song, David T. Chuang, Wah Chiu, Steven J. Ludtke

Journal:

Year:

2006

Language:

english

File:

PDF, 1.28 MB

english, 2006

17

De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy

Steven J. Ludtke, Matthew L. Baker, Dong-Hua Chen, Jiu-Li Song, David T. Chuang, Wah Chiu

Journal:

Year:

2008

Language:

english

File:

PDF, 1.67 MB

english, 2008

18

Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy

Yao Cong, Qinfen Zhang, David Woolford, Thorsten Schweikardt, Htet Khant, Matthew Dougherty, Steven J. Ludtke, Wah Chiu, Heinz Decker

Journal:

Year:

2009

Language:

english

File:

PDF, 2.05 MB

english, 2009

19

Structure of an Apoptosome-Procaspase-9 CARD Complex

Shujun Yuan, Xinchao Yu, Maya Topf, Steven J. Ludtke, Xiaodong Wang, Christopher W. Akey

Journal:

Year:

2010

Language:

english

File:

PDF, 3.51 MB

english, 2010

20

Structure of the Drosophila Apoptosome at 6.9 Å Resolution

Shujun Yuan, Xinchao Yu, Maya Topf, Loretta Dorstyn, Sharad Kumar, Steven J. Ludtke, Christopher W. Akey

Journal:

Year:

2011

Language:

english

File:

PDF, 4.80 MB

english, 2011

21

Flexible Architecture of IP3R1 by Cryo-EM

Steven J. Ludtke, Thao P. Tran, Que T. Ngo, Vera Yu. Moiseenkova-Bell, Wah Chiu, Irina I. Serysheva

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

22

The Holo-Apoptosome: Activation of Procaspase-9 and Interactions with Caspase-3

Shujun Yuan, Xinchao Yu, John M. Asara, John E. Heuser, Steven J. Ludtke, Christopher W. Akey

Journal:

Year:

2011

Language:

english

File:

PDF, 2.20 MB

english, 2011

23

Outcome of the First Electron Microscopy Validation Task Force Meeting

Richard Henderson, Andrej Sali, Matthew L. Baker, Bridget Carragher, Batsal Devkota, Kenneth H. Downing, Edward H. Egelman, Zukang Feng, Joachim Frank, Nikolaus Grigorieff, Wen Jiang, Steven J. Ludtke

Journal:

Year:

2012

Language:

english

File:

PDF, 695 KB

english, 2012

24

Constructing and Validating Initial Cα Models from Subnanometer Resolution Density Maps with Pathwalking

Mariah R. Baker, Ian Rees, Steven J. Ludtke, Wah Chiu, Matthew L. Baker

Journal:

Year:

2012

Language:

english

File:

PDF, 1.97 MB

english, 2012

25

Bridging the information gap: computational tools for intermediate resolution structure interpretation

Wen Jiang, Matthew L. Baker, Steven J. Ludtke, Wah Chiu

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 589 KB

english, 2001

26

A 11.5 Å single particle reconstruction of GroEL using EMAN

Steven J Ludtke, Joanita Jakana, Jiu-Li Song, David T Chuang, Wah Chiu

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 398 KB

english, 2001

27

EMAN: Semiautomated Software for High-Resolution Single-Particle Reconstructions

Steven J. Ludtke, Philip R. Baldwin, Wah Chiu

Journal:

Journal of Structural Biology

Year:

1999

Language:

english

File:

PDF, 599 KB

english, 1999

28

Fourier Amplitude Decay of Electron Cryomicroscopic Images of Single Particles and Effects on Structure Determination

Ali Saad, Steven J. Ludtke, Joanita Jakana, Frazer J. Rixon, Hiro Tsuruta, Wah Chiu

Journal:

Journal of Structural Biology

Year:

2001

Language:

english

File:

PDF, 156 KB

english, 2001

29

Editorial

Steven Ludtke, Wah Chiu

Journal:

Journal of Structural Biology

Year:

2001

Language:

english

File:

PDF, 10 KB

english, 2001

30

Cooperative membrane insertion of magainin correlated with its cytolytic activity

Steven J. Ludtke, Ke He, Yili Wu, Huey W. Huang

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

1994

Language:

english

File:

PDF, 340 KB

english, 1994

31

Structure of Ca2+ Release Channel at 14 Å Resolution

Irina I. Serysheva, Susan L. Hamilton, Wah Chiu, Steven J. Ludtke

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 225 KB

english, 2005

32

Architecture of the Ribosome–Channel Complex Derived from Native Membranes

Jean-François Ménétret, Ramanujan S. Hegde, Sven U. Heinrich, Preethi Chandramouli, Steven J. Ludtke, Tom A. Rapoport, Christopher W. Akey

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.00 MB

english, 2005

33

Automatic particle selection: results of a comparative study

Yuanxin Zhu, Bridget Carragher, Robert M Glaeser, Denis Fellmann, Chandrajit Bajaj, Marshall Bern, Fabrice Mouche, Felix de Haas, Richard J Hall, David J Kriegman, Steven J Ludtke, Satya P Mallick, Pa

Journal:

Journal of Structural Biology

Year:

2004

Language:

english

File:

PDF, 597 KB

english, 2004

34

Focal pair merging for contrast enhancement of single particles

Steven J. Ludtke, Wah Chiu

Journal:

Journal of Structural Biology

Year:

2003

Language:

english

File:

PDF, 388 KB

english, 2003

35

A 9 Å single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope

Christopher R. Booth, Wen Jiang, Matthew L. Baker, Z. Hong Zhou, Steven J. Ludtke, Wah Chiu

Journal:

Journal of Structural Biology

Year:

2004

Language:

english

File:

PDF, 847 KB

english, 2004

36

SPARX, a new environment for Cryo-EM image processing

Michael Hohn, Grant Tang, Grant Goodyear, P.R. Baldwin, Zhong Huang, Pawel A. Penczek, Chao Yang, Robert M. Glaeser, Paul D. Adams, Steven J. Ludtke

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 623 KB

english, 2007

37

Structural Analysis of the Anaphase-Promoting Complex Reveals Multiple Active Sites and Insights into Polyubiquitylation

Lori A. Passmore, Christopher R. Booth, Catherine Vénien-Bryan, Steven J. Ludtke, Céline Fioretto, Louise N. Johnson, Wah Chiu, David Barford

Journal:

Year:

2005

Language:

english

File:

PDF, 808 KB

english, 2005

38

Ribosome Binding of a Single Copy of the SecY Complex: Implications for Protein Translocation

Jean-François Ménétret, Julia Schaletzky, William M. Clemons Jr., Andrew R. Osborne, Sigrid S. Skånland, Carilee Denison, Steven P. Gygi, Don S. Kirkpatrick, Eunyong Park, Steven J. Ludtke, Tom A. Rap

Journal:

Year:

2007

Language:

english

File:

PDF, 2.05 MB

english, 2007

39

Electron Cryomicroscopy of IP3R1 Calcium Release Channel

Ngo, Que T., Maxwell, Joshua T., Mignery, Gregory A., Chiu, Wah, Ludtke, Steven J., Serysheva, Irina I.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 37 KB

english, 2009

40

Characterization of Antibiotic Peptide Pores Using Cryo-EM and Comparison to Neutron Scattering

Han, Mikyung, Mei, Yuan, Khant, Htet, Ludtke, Steven J.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 584 KB

english, 2009

41

Rocking Motion of a Protein-Folding Nano-Machine Revealed By Single-Particle Cryo-Em

Zhang, Junjie, Baker, Matthew L., Schroeder, Gunnar, Douglas, Nick R., Jakana, Joanita, Fu, Caroline J., Levitt, Michael, Ludtke, Steven J., Frydman, Judith, Chiu, Wah

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

42

Domain organization of membrane-bound factor VIII

Stoilova-McPhie, Svetla, Lynch, Gillian C., Ludtke, Steven, Pettitt, B. Montgomery

Journal:

Year:

2013

Language:

english

File:

PDF, 2.45 MB

english, 2013

43

eLS || Electron Cryomicroscopy and Three-dimensional Computer Reconstruction of Biological Molecules

Ludtke, Steven J

Year:

2001

Language:

english

File:

PDF, 492 KB

english, 2001

44

Superparamagnetic gadonanotubes are high-performance MRI contrast agents

Sitharaman, Balaji, Kissell, Kyle R., Hartman, Keith B., Tran, Lesa A., Baikalov, Andrei, Rusakova, Irene, Sun, Yanyi, Khant, Htet A., Ludtke, Steven J., Chiu, Wah, Laus, Sabrina, Tóth, Éva, Helm, Lot

Journal:

Chemical Communications

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

45

Structure of the SecY channel during initiation of protein translocation

Park, Eunyong, Ménétret, Jean-François, Gumbart, James C., Ludtke, Steven J., Li, Weikai, Whynot, Andrew, Rapoport, Tom A., Akey, Christopher W.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.96 MB

english, 2013

46

Single-particle Cryo-EM of calcium release channels: structural validation

Ludtke, Steven J, Serysheva, Irina I

Journal:

Current Opinion in Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

47

Cryo-EM Structure of a Molluscan Hemocyanin Suggests Its Allosteric Mechanism

Zhang, Qinfen, Dai, Xinghong, Cong, Yao, Zhang, Junjie, Chen, Dong-Hua, Dougherty, Matthew T., Wang, Jiangyong, Ludtke, Steven J., Schmid, Michael F., Chiu, Wah

Journal:

Year:

2013

Language:

english

File:

PDF, 2.35 MB

english, 2013

48

Domain Organization of Membrane-Bound Factor VIII

Stoilova-McPhie, Svetla, Lynch, Gillian C., Ludtke, Steven, Pettitt, Bernard M.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 56 KB

english, 2013

49

OBITUARY

Stoilova-McPhie, Svetla, Lynch, Gillian C., Ludtke, Steven, Pettitt, Bernard M.

Journal:

Year:

1935

Language:

english

File:

PDF, 427 KB

english, 1935

50

Visualizing Alpha Helices in the Transmembrane Region of IP3R1 Calcium Release Channel by Single Particle Electron Cryomicroscopy

Ludtke, Steven J., Tran, Thao P., Ngo, Que T., Moiseenkova-Bell, Vera Y., Maxwell, Joshua T., Mignery, Gregory A., Chiu, Wah, Serysheva, Irina I.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 35 KB

english, 2010